Differential Gene Expression

Learning Objectives

DRAFT learning objectives

  • Identify a data set of interest using the NCBI GEO repository.
  • Organize data to read into R for analysis (e.g. mean, SD, ANOVA)
  • Create a graphical summary of genes that are up and down regulated.

–> next steps might include: file join to identify Gene Ontology categories; identify co-regulated genes–> display with heatmaps, parallel plots

Example Display

plot of chunk unnamed-chunk-1